Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_2070Transcriptional regulator, AraC family. (236 aa)    
Predicted Functional Partners:
PP_2066
Transcriptional regulator, GntR family.
  
  
 0.625
PP_2071
Homologs of previously reported genes of unknown function.
  
 
 0.571
PP_2069
Putative Multidrug efflux MFS outer membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.534
PP_2068
Putative Multidrug efflux MFS membrane fusion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.509
PP_2072
Transcriptional regulator, AraC family.
 
   0.499
cobB-2
Deacetylase of acetyl-CoA synthetase, NAD-dependent; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form; Belongs to the sirtuin family. Class III subfamily.
  
    0.481
flgG
Flagellar basal-body rod protein FlgG; Function of homologous gene experimentally demonstrated in an other organism; structure; Cellenvelope : Surface structures; Belongs to the flagella basal body rod proteins family.
    
   0.461
PP_2004
Transcriptional regulator, AraC family.
  
   0.453
PP_0204
Transcriptional regulator, GntR family.
  
  
 0.443
PP_1697
Transcriptional regulator, GntR family; Function of strongly homologous gene; regulator; Transcription.
  
  
 0.443
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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