STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2072Transcriptional regulator, AraC family. (274 aa)    
Predicted Functional Partners:
PP_2071
Homologs of previously reported genes of unknown function.
 
 
 
 0.957
PP_2073
Acetyltransferase, GNAT family.
 
    0.758
PP_4605
Transcriptional regulator, AraC family.
  
     0.596
rdoA
Serine/threonine protein kinase; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.
   
  
 0.569
modR
Molybdate transport regulator.
      
 0.555
PP_2070
Transcriptional regulator, AraC family.
 
   0.499
PP_2425
Putative transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.493
PP_2173
Transcriptional regulator, AraC family.
  
     0.480
PP_3640
Transcriptional regulator, AraC family.
  
    0.472
PP_2074
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
     
 0.469
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.