STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lysRTranscriptional activator protein LysR; Function of homologous gene experimentally demonstrated in an other organism; regulator; Aminoacidbiosynthesis : Aspartate family; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
PP_4482
Transcriptional regulator, AraC family.
   
  
 0.813
atoA
Acetoacetyl CoA-transferase (subunit A); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
      
 0.767
PP_3434
Homologs of previously reported genes of unknown function.
      
 0.767
PP_2480
Putative Xanthine dehydrogenase accessory factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.765
PP_4231
Putative Xanthine dehydrogenase accessory factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.765
yneJ
Putative DNA-binding transcriptional regulator, LysR-type; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Transcription; Belongs to the LysR transcriptional regulatory family.
  
    0.759
PP_4467
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.750
PP_2701
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.746
GbpR
Galactose-binding protein regulator; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.746
PP_3560
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.745
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.