STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmaXCmaX protein. (332 aa)    
Predicted Functional Partners:
cmpX
CmpX protein.
  
  
 0.905
PP_2084
Putative regulator of ribonuclease activity; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity).
     
 0.757
znuC
Zinc import ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
     
 0.715
oprF
Outer membrane porin F.
  
  
 0.647
PP_2086
Conserved protein of unknown function, CrfX family; Homologs of previously reported genes of unknown function; Unknown function.
  
    0.614
oprP
Porin P; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
   
  
 0.594
PP_2083
Putative Lipase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.529
PP_2088
RNA polymerase sigma factor SigX; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.515
PP_0249
Homologs of previously reported genes of unknown function.
 
     0.497
xenA
XenA.
   
  
 0.487
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.