Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_2121Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (73 aa)    
Predicted Functional Partners:
csbD
Stress response protein; Function of homologous gene experimentally demonstrated in an other organism; factor; Cellularprocesses : Adaptations to atypical conditions; Belongs to the UPF0337 (CsbD) family.
   
    0.804
PP_0135
Homologs of previously reported genes of unknown function; Unknown function.
   
    0.782
PP_2059
UPF0337 protein PP_2059; Belongs to the UPF0337 (CsbD) family.
   
    0.714
PP_4856
Ferritin, Dps family protein.
   
    0.654
PP_1325
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
     
 0.587
PP_0367
Homologs of previously reported genes of unknown function.
      
 0.584
PP_0753
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.584
PP_2951
Transcriptional regulator, TetR family.
      
 0.574
moaB-I
Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.
  
    0.558
PP_4307
Putative permease of the drug/metabolite transporter (DMT) superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
      
 0.552
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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