STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copR-ITranscriptional activator protein; Function experimentally demonstrated in the studied genus; regulator; Biologicalprocesses : Control. (226 aa)    
Predicted Functional Partners:
PP_2157
Sensor histidine kinase; Member of a two-component regulatory system.
 0.996
copS
Copper sensor protein; Member of a two-component regulatory system.
 0.985
PP_1437
Heavy metal sensor histidine kinase; Member of a two-component regulatory system.
 0.984
czrSA
Metal-sensor histidine kinase; Member of a two-component regulatory system.
 0.983
czcR-III
Response regulator; Function of strongly homologous gene; regulator; Biologicalprocesses : Control.
  
  
 
0.903
copR-II
Transcriptional activator protein; Function experimentally demonstrated in the studied genus; regulator; Biologicalprocesses : Control.
  
  
 
0.901
PP_2906
Sensor histidine kinase.
 
 0.813
PP_1421
Putative Sensor histidine kinase TctE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.742
PP_4505
Sensor histidine kinase.
 
 0.708
PP_4224
Sensor histidine kinase.
 
 0.694
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.