STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2166Anti-anti-sigma factor. (160 aa)    
Predicted Functional Partners:
PP_2165
Response regulator.
 
 
 0.994
PP_4362
Homologs of previously reported genes of unknown function.
 
  
 0.928
PP_3024
Homologs of previously reported genes of unknown function.
  
 
 0.897
PP_3761
Sensor histidine kinase/response regulator.
  
  
 0.885
PP_4363
Sensor histidine kinase/response regulator.
 
 
 0.779
bvgA
Putative Virulence factors positive transcription regulator BvgA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  
 0.768
flgJ
Peptidoglycan hydrolase FlgJ.
   
    0.767
flgE
Flagellar hook protein FlgE.
   
    0.767
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.756
flgB
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.756
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.