Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_2173Transcriptional regulator, AraC family. (289 aa)    
Predicted Functional Partners:
PP_3640
Transcriptional regulator, AraC family.
  
     0.595
PP_5244
Transcriptional regulator, AraC family.
  
     0.595
PP_2383
Transcriptional regulator, AraC family.
  
     0.592
PP_2174
Homologs of previously reported genes of unknown function.
 
     0.590
PP_3439
Transcriptional regulator, AraC family.
  
     0.589
PP_2430
Transcriptional regulator, AraC family.
  
     0.567
PP_3022
Transcriptional regulator, AraC family.
  
     0.520
PP_3526
Transcriptional regulator, AraC family.
 
 
 0.504
benR
BenABC operon transcriptional activator; Function experimentally demonstrated in the studied species; regulator; Energy metabolism.
 
 
 0.481
PP_2072
Transcriptional regulator, AraC family.
  
     0.480
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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