STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2202Homologs of previously reported genes of unknown function. (145 aa)    
Predicted Functional Partners:
PP_2203
Homologs of previously reported genes of unknown function.
       0.813
copB-I
Copper resistance protein B; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
       0.759
copA-I
Copper resistance protein A; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
       0.746
yegQ
Putative peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.637
PP_2201
Hydrolase, alpha/beta fold family.
  
  
 0.575
PP_2533
D-isomer specific 2-hydroxyacid dehydrogenase family protein.
       0.488
PP_2968
Putative nickel/cobalt transporter, high-affinity; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins; Belongs to the NiCoT transporter (TC 2.A.52) family.
       0.485
csoR
Putative repressor of copper utilisation proteins; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Biologicalprocesses : Control.
       0.469
pycB
Pyruvate carboxylase subunit B; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energy metabolism.
     
 0.412
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.