Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_2203Homologs of previously reported genes of unknown function. (142 aa)    
Predicted Functional Partners:
copB-I
Copper resistance protein B; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
  
 0.848
PP_2202
Homologs of previously reported genes of unknown function.
       0.813
copA-I
Copper resistance protein A; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
 
   
 0.812
PP_2201
Hydrolase, alpha/beta fold family.
       0.643
PP_5378
Putative metal-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
    0.584
copB-II
Copper resistance protein B; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
   
 0.582
yegQ
Putative peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.542
PP_2159
Copper-binding protein, plastocyanin/azurin family.
 
  
 0.439
cadA-II
Cadmium translocating P-type ATPase; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
 
   
 0.415
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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