Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
copB-ICopper resistance protein B; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate. (294 aa)    
Predicted Functional Partners:
copA-I
Copper resistance protein A; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
  
 0.997
copA-II
Copper resistance protein A; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
  
 0.987
cumA
Multicopper oxidase; Function experimentally demonstrated in the studied species; enzyme.
 
  
 0.918
PP_2203
Homologs of previously reported genes of unknown function.
  
 0.848
PP_2202
Homologs of previously reported genes of unknown function.
       0.759
PP_2159
Copper-binding protein, plastocyanin/azurin family.
 
  
 0.740
czcC
Metal RND efflux outer membrane protein, CzcC family; Function experimentally demonstrated in the studied genus; factor; Biologicalprocesses : Excrete.
 
   
 0.626
PP_2157
Sensor histidine kinase; Member of a two-component regulatory system.
 
  
 0.564
yegQ
Putative peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.559
copS
Copper sensor protein; Member of a two-component regulatory system.
 
   
 0.552
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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