STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2224Homologs of previously reported genes of unknown function. (70 aa)    
Predicted Functional Partners:
PP_5042
Homologs of previously reported genes of unknown function.
      
 0.923
PP_1642
Homologs of previously reported genes of unknown function.
      
 0.916
PP_5322
Putative metal ion transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
      
 0.914
tadA
tRNA-specific adenosine deaminase monomer; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
   
  
 0.838
sbp-I
Sulfate ABC transporter; Function of homologous gene experimentally demonstrated in an other organism; carrier; Centralintermediarymetabolism : Sulfur metabolism.
      
 0.836
PP_2223
Homologs of previously reported genes of unknown function.
  
    0.807
PP_5734
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
      
 0.754
cusF
Probable exported copper efflux protein; Function of homologous gene experimentally demonstrated in an other organism; factor; Biologicalprocesses : Excrete.
      
 0.741
PP_2222
Homologs of previously reported genes of unknown function.
  
    0.418
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.