STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2234Transcriptional regulator, AraC family. (330 aa)    
Predicted Functional Partners:
PP_2233
Hydrolase, isochorismatase family.
 
    0.758
PP_5244
Transcriptional regulator, AraC family.
  
   0.720
PP_3439
Transcriptional regulator, AraC family.
  
   0.698
PP_4511
Transcriptional regulator, AraC family.
  
   0.621
PP_2425
Putative transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
   0.599
PP_2960
Transcriptional regulator, AraC family; Function of strongly homologous gene; regulator; Regulatory functions.
  
   0.593
PP_2235
Homologs of previously reported genes of unknown function.
  
    0.576
PP_1711
Transcriptional regulator, AraC family.
  
   0.531
PP_3444
Glyoxalase family protein.
 
    0.441
PP_2880
Transcriptional regulator, TetR family.
  
     0.429
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.