STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhtAThreonine and homoserine exporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Amino acids, peptides and amines. (295 aa)    
Predicted Functional Partners:
PP_2870
Putative spermidine/putrescine-binding periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Biologicalprocesses : Circulate.
      
 0.762
PP_2232
XRE family transcriptional regulator.
 
   
 0.706
PP_5504
Homologs of previously reported genes of unknown function.
       0.705
hemA
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
      
 0.681
PP_2868
Transcriptional regulator, Cro/CI family.
     
 0.581
PP_5277
Major facilitator family transporter.
      
 0.577
PP_4020
Putative Oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.575
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
      
 0.539
hemB
5-aminolevulinate dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biosynthesisofcofactors,prostheticgroups,andcarriers : Heme, porphyrin, and cobalamin; Belongs to the ALAD family.
      
 0.533
PP_4566
Putative drug/metabolite transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
      
 0.530
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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