STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2243Homologs of previously reported genes of unknown function. (200 aa)    
Predicted Functional Partners:
cobJ
Precorrin-3B C17-methyltransferase.
 
  
 0.596
fepA
Ferric enterobactin transport system outer membrane subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Cations and iron carrying compounds.
       0.584
PP_3763
Putative CobF protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.575
cobK
Precorrin-6x reductase.
 
  
 0.522
cobL
precorrin-6Y C(5,15)-methyltransferase; Function of strongly homologous gene; enzyme.
 
  
 0.489
cobH
Precorrin-8X methylmutase.
 
  
 0.456
cobI
Precorrin-2 C(20)-methyltransferase; Methylates precorrin-2 at the C-20 position to produce precorrin-3A.
 
  
 0.455
nfxB
HTH-type transcriptional regulator nfxB.
  
    0.454
PP_0709
Transporter, NCS1 nucleoside transporter family; Belongs to the purine-cytosine permease (2.A.39) family.
  
     0.446
cobQ
Adenosyl-cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.438
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.