STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dauACatabolic D-arginine dehydrogenase, FAD-dependent; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Amino acids and amines. (378 aa)    
Predicted Functional Partners:
PP_2247
Putative Endoribonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.755
soxA
Sarcosine oxidase subunit alpha; Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Degradation; Belongs to the GcvT family.
  
 
 0.729
kguT
2-ketogluconate transporter, putative; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Carbohydrates, organic alcohols, and acids.
   
  
 0.652
PP_2245
Transcriptional regulator, Cro/CI family.
 
    0.604
PP_2248
Putative transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
    0.501
alr
Alanine racemase; Amino-acid racemase able to utilize a broad range of substrates. Reversibly racemizes 9 of the 19 natural chiral amino acids known, including both positively charged amino acids (Lys, Arg and His) and non-beta-branched aliphatic amino acids (Ala, Leu, Met, Ser, Gln and Asn). Among these amino acids, activity is the highest with lysine and arginine, and poor or very poor with the others. Plays a primary role in the catabolism of basic amino acid, that allows P.putida strain KT2440 to grow on L-Lys and L-Arg as the sole source of carbon and nitrogen, through conversion [...]
  
  
 0.487
dadX
Alanine racemase, PLP-binding; Isomerizes L-alanine to D-alanine which is then likely oxidized to pyruvate by DadA. Shows racemase activity with both alanine stereoisomers, negligible activity with D-cysteine and L-serine, and exhibits no activity with the remaining natural chiral amino acids.
  
  
 0.484
PP_4618
Homologs of previously reported genes of unknown function.
  
     0.440
PP_3192
Homologs of previously reported genes of unknown function.
  
  
 0.434
yfiP
Conserved protein; Homologs of previously reported genes of unknown function; Unknown function.
  
     0.433
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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