STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2250Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (292 aa)    
Predicted Functional Partners:
PP_2251
Homologs of previously reported genes of unknown function.
 
    0.835
PP_3447
Homologs of previously reported genes of unknown function.
  
    0.580
pctB
Methyl-accepting chemotaxis protein PctB; Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of methylation. McpA is a chemoreceptor that binds to 12 different L-amino acids and mediates chemotaxis toward these amino acids.
       0.531
PP_3512
Homologs of previously reported genes of unknown function.
  
     0.519
PP_2502
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.516
PP_1688
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.447
PP_3934
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.442
PP_1391
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.441
PP_5261
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.434
PP_3534
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.410
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.