STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PP_2269Putative N-acetylmuramoyl-L-alanine amidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (149 aa)    
Predicted Functional Partners:
PP_2267
Putative Phage single-stranded DNA-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.960
pqqA
Coenzyme PQQ synthesis protein A; Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis. PQQ is probably formed by cross-linking a specific glutamate to a specific tyrosine residue and excising these residues from the peptide (By similarity); Belongs to the PqqA family.
      
 0.867
yadG
Putative ABC transporter - ATP binding subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
      
 0.819
PP_2268
Phage endodeoxyribonuclease I.
  
    0.788
agmR
Glycerol metabolism activator.
      
 0.783
gbdR
AraC-family transcriptional regulator; Function experimentally demonstrated in the studied genus; regulator; Regulatory functions.
      
 0.766
gstB
Glutathione S-transferase reducing arsenate to arsenite; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Unknownfunction : Enzymes of unknown specificity.
   
  
 0.765
PP_2270
Putative DNA primase/helicase protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
 
     0.567
PP_4799
Putative Muramoyltetrapeptide carboxypeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.554
nagZ
beta-N-acetylglucosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
    
 0.546
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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