STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2279Head-to-tail joining protein. (524 aa)    
Predicted Functional Partners:
PP_2273
DNA polymerase I from phage origin; Function of strongly homologous gene; extrachromosomal origin; DNAmetabolism : DNA replication, recombination, and repair.
 
     0.827
PP_2270
Putative DNA primase/helicase protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
 
    0.804
PP_2293
DNA maturase B.
 
    0.802
PP_2278
Homologs of previously reported genes of unknown function.
  
    0.768
PP_5512
Protein of unknown function; No homology to any previously reported sequences; Unknown function.
       0.762
PP_2266
DNA-directed RNA polymerase, bacteriophage and mitochondrial type.
  
    0.759
PP_2276
Putative phage exonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Mobileandextrachromosomalelementfunctions : Prophage functions.
 
     0.753
PP_2277
Homologs of previously reported genes of unknown function.
       0.595
PP_2281
Putative Capsid assembly protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.514
PP_5513
Homologs of previously reported genes of unknown function; extrachromosomal origin; Mobileandextrachromosomalelementfunctions : Prophage functions.
       0.434
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.