STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2282Minor capsid protein 10. (322 aa)    
Predicted Functional Partners:
PP_2284
Tail tubular protein B.
  
    0.644
PP_2283
Tail tubular protein A.
  
    0.638
PP_2285
Homologs of previously reported genes of unknown function.
  
    0.475
PP_5514
Homologs of previously reported genes of unknown function; Unknown function.
       0.465
PP_2286
Homologs of previously reported genes of unknown function.
  
    0.463
PP_2287
Phage internal core protein.
  
    0.449
PP_2281
Putative Capsid assembly protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.410
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.