STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2320Homologs of previously reported genes of unknown function. (325 aa)    
Predicted Functional Partners:
PP_1451
Homologs of previously reported genes of unknown function.
 
  
 0.772
ftsI
Peptidoglycan DD transpeptidase; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.
  
  
 0.595
PP_2319
Homologs of previously reported genes of unknown function.
       0.584
tesA
acyl-CoA thioesterase I/protease I/lysophospholipase L1; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Central intermediary metabolism.
     
 0.576
dacA
D-alanyl-D-alanine carboxypeptidase; Function of strongly homologous gene; enzyme; Belongs to the peptidase S11 family.
    
 0.570
ybbA
Putative ABC transporter - ATP binding subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
  
    0.480
PP_2316
Putative ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.457
PP_1236
Putative Glycine cleavage system transcriptional repressor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.433
PP_2330
Homologs of previously reported genes of unknown function.
  
     0.426
PP_2331
Homologs of previously reported genes of unknown function.
  
     0.400
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.