Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
oprIMajor outer membrane lipoprotein. (83 aa)    
Predicted Functional Partners:
oprL
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
  
 0.901
PP_2323
Homologs of previously reported genes of unknown function.
  
  
 0.855
oprH
Outer membrane protein H1.
   
  
 0.775
oprF
Outer membrane porin F.
   
  
 0.754
oprQ
Outer-membrane porin D; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Porins.
      
 0.706
oprG
Outer membrane protein OprG.
   
  
 0.704
PP_1692
Homologs of previously reported genes of unknown function; Unknown function.
      
 0.654
PP_0707
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
      
 0.653
PP_1728
Homologs of previously reported genes of unknown function.
      
 0.653
PP_2741
Homologs of previously reported genes of unknown function.
      
 0.653
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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