Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cysBTranscriptional dual regulator / CysB-O-acetyl-L-serine; Function of homologous gene experimentally demonstrated in an other organism; regulator; Aminoacidbiosynthesis : Serine family; Belongs to the LysR transcriptional regulatory family. (324 aa)    
Predicted Functional Partners:
PP_5370
Oxidoreductase-related protein.
      
 0.851
hrpB
ATP-dependent helicase HrpB.
     
 0.743
PP_2326
Universal stress protein.
  
    0.740
cysE
Serine acetyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Aminoacidbiosynthesis : Serine family.
      
 0.733
PP_0661
Putative Transcriptional regulator AmpR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the LysR transcriptional regulatory family.
  
   
 0.712
cysD
Sulfate adenylyltransferase subunit 2.
      
 0.707
cysK
Cysteine synthase A; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Aminoacidbiosynthesis : Serine family; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
  
 0.681
nusA
Transcription termination/antitermination L factor; Participates in both transcription termination and antitermination.
      
 0.656
rsfS
Ribosomal silencing factor RsfS; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
      
 0.656
GbpR
Galactose-binding protein regulator; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family.
  
   
 0.622
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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