Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_2344Homologs of previously reported genes of unknown function. (359 aa)    
Predicted Functional Partners:
PP_2346
Homologs of previously reported genes of unknown function.
     
 0.716
PP_2308
Putative Acyl-CoA thioesterase II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.671
PP_3923
Phosphoglycerate mutase.
  
     0.614
PP_2345
Homologs of previously reported genes of unknown function.
     
 0.590
PP_2891
Acetyltransferase, GNAT family.
  
     0.575
PP_2347
DNA-binding response regulator.
       0.562
PP_2348
Sensor histidine kinase.
       0.562
PP_4270
Homologs of previously reported genes of unknown function.
  
     0.555
PP_0332
Putative Acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.538
queD
6-carboxy-5,6,7,8-tetrahydropterin synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.488
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.