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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2344Homologs of previously reported genes of unknown function. (359 aa)    
Predicted Functional Partners:
PP_2308
Putative Acyl-CoA thioesterase II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.666
PP_3923
Phosphoglycerate mutase.
  
     0.614
PP_2891
Acetyltransferase, GNAT family.
  
     0.575
PP_4270
Homologs of previously reported genes of unknown function.
  
     0.555
PP_2346
Homologs of previously reported genes of unknown function.
     
 0.551
PP_0332
Putative Acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.539
PP_2345
Homologs of previously reported genes of unknown function.
     
 0.528
PP_2347
DNA-binding response regulator.
       0.499
PP_2348
Sensor histidine kinase.
       0.499
PP_1080
Putative oxidoreductase molybdopterin-binding; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
     0.469
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.