STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2348Sensor histidine kinase. (439 aa)    
Predicted Functional Partners:
PP_2346
Homologs of previously reported genes of unknown function.
 
  
 0.964
PP_2347
DNA-binding response regulator.
 
 
 0.962
phoP
Two component system DNA-binding transcriptional dual regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 
 0.822
PP_2345
Homologs of previously reported genes of unknown function.
  
  
 0.818
PP_2713
DNA-binding response regulator.
 
 
 0.643
qseB
Two component system DNA-binding transcriptional activator QseB; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 
 
 0.618
tctD
Transcriptional regulatory protein tctD.
 
 
 0.605
kdpE
Two-component system DNA-binding response activator KdpE; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 
 
 0.572
colR
DNA-binding response regulator; Function of strongly homologous gene; regulator; Regulatory functions.
 
 
 0.563
PP_2344
Homologs of previously reported genes of unknown function.
       0.562
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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