PP_2354 protein (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PP_2354

Sensory box histidine kinase/response regulator. (795 aa)

Predicted Functional Partners:

PP_3761

0.976

PP_3758

0.974

PP_1695

0.967

gacS

0.966

PP_2100

0.965

PP_3413

0.964

PP_3430

0.964

PP_3728

0.960

PP_4824

0.957

PP_2683

0.955

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_1695	PP_2100	PP_1695	PP_2100	Putative Sodium-solute symporter/sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.	0.972
PP_1695	PP_2354	PP_1695	PP_2354	Putative Sodium-solute symporter/sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Sensory box histidine kinase/response regulator.	0.967
PP_1695	PP_2683	PP_1695	PP_2683	Putative Sodium-solute symporter/sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	0.966
PP_1695	PP_3413	PP_1695	PP_3413	Putative Sodium-solute symporter/sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Sensor histidine kinase/response regulator.	0.970
PP_1695	PP_3430	PP_1695	PP_3430	Putative Sodium-solute symporter/sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Sensory box histidine kinase/response regulator.	0.960
PP_1695	PP_3728	PP_1695	PP_3728	Putative Sodium-solute symporter/sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Sensor histidine kinase/response regulator.	0.963
PP_1695	PP_3758	PP_1695	PP_3758	Putative Sodium-solute symporter/sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Response regulator/sensor histidine kinase.	0.946
PP_1695	PP_3761	PP_1695	PP_3761	Putative Sodium-solute symporter/sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Sensor histidine kinase/response regulator.	0.975
PP_1695	PP_4824	PP_1695	PP_4824	Putative Sodium-solute symporter/sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Sensor histidine kinase/response regulator.	0.946
PP_1695	gacS	PP_1695	PP_1650	Putative Sodium-solute symporter/sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Sensor protein GacS.	0.963
PP_2100	PP_1695	PP_2100	PP_1695	Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.	Putative Sodium-solute symporter/sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.972
PP_2100	PP_2354	PP_2100	PP_2354	Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.	Sensory box histidine kinase/response regulator.	0.965
PP_2100	PP_2683	PP_2100	PP_2683	Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.	Putative sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	0.960
PP_2100	PP_3413	PP_2100	PP_3413	Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.	Sensor histidine kinase/response regulator.	0.996
PP_2100	PP_3430	PP_2100	PP_3430	Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.	Sensory box histidine kinase/response regulator.	0.958
PP_2100	PP_3728	PP_2100	PP_3728	Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.	Sensor histidine kinase/response regulator.	0.972
PP_2100	PP_3758	PP_2100	PP_3758	Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.	Response regulator/sensor histidine kinase.	0.959
PP_2100	PP_3761	PP_2100	PP_3761	Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.	Sensor histidine kinase/response regulator.	0.980
PP_2100	PP_4824	PP_2100	PP_4824	Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.	Sensor histidine kinase/response regulator.	0.962
PP_2100	gacS	PP_2100	PP_1650	Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.	Sensor protein GacS.	0.972