Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_2356Putative Phytochrome family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (755 aa)    
Predicted Functional Partners:
PP_2355
Response regulator receiver protein.
 
  
 0.966
PP_2354
Sensory box histidine kinase/response regulator.
 
 
 
 0.926
cheR3
Putative methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
     0.858
PP_3834
Homologs of previously reported genes of unknown function.
 
 
 0.847
PP_3651
Sensor histidine kinase/response regulator.
   
 0.781
PP_3430
Sensory box histidine kinase/response regulator.
 
 
 
 0.745
PP_3761
Sensor histidine kinase/response regulator.
 
 
0.729
PP_3835
Sensory box histidine kinase.
   
 0.706
PP_3413
Sensor histidine kinase/response regulator.
 
 
 
0.650
PP_3728
Sensor histidine kinase/response regulator.
 
 
0.635
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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