Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_2363Homologs of previously reported genes of unknown function. (323 aa)    
Predicted Functional Partners:
PP_2361
Putative chaperone protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
 0.999
PP_2362
Putative usher protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
 
 
 0.997
PP_2357
Putative Type 1 pili protein CsuB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    
 0.996
PP_2360
Putative type 1 pili subunit CsuA/B protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; cell process.
 
  
 0.993
PP_2359
Putative Type 1 pili subunit CsuA/B protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
  0.992
PP_2358
Putative Type 1 pili subunit CsuA/B protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.971
PP_1890
Type 1 pili chaperone protein FimC.
  
 0.934
fimD
Type 1 pili subunit FimD.
 
 
 0.927
PP_4329
FlhB domain protein.
      
 0.866
ycgR
Flagellar brake protein YcgR; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Increasing levels of c-di-GMP lead to decreased motility (By similarity). Binds c-di-GMP with a dissociation constant of 165 nM. Binds 2 intercalated (c-di-GMP) dimers per subunit.
      
 0.748
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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