STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_2372Putative Periplasmic sugar-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (358 aa)    
Predicted Functional Partners:
PP_2761
Putative Ribose ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.761
rbsD
Ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.757
PP_3413
Sensor histidine kinase/response regulator.
   
 
 0.752
PP_2760
Putative ribose transport permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.742
PP_3761
Sensor histidine kinase/response regulator.
   
 
 0.742
rbsC
D-ribose ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Energy metabolism; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.733
PP_2100
Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.
   
 
 0.722
gacS
Sensor protein GacS.
   
 
 0.711
PP_3728
Sensor histidine kinase/response regulator.
   
 
 0.711
rbsA-II
Ribose ABC transporter - ATP-binding subunit; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 
 0.705
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.