PP_2380 protein (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

PP_2380

Homologs of previously reported genes of unknown function. (160 aa)

Predicted Functional Partners:

PP_2379

0.936

PP_0103

0.877

petA

0.660

petB

0.658

PP_0111

0.628

PP_3335

0.623

PP_3248

0.589

cyoA

0.539

ccoP-II

0.534

ccoP-I

0.530

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_0103	PP_0111	PP_0103	PP_0111	Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Electron transport protein SCO1/SenC.	0.765
PP_0103	PP_2379	PP_0103	PP_2379	Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Putative cytochrome oxidase biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Energymetabolism : Electron transport.	0.758
PP_0103	PP_2380	PP_0103	PP_2380	Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Homologs of previously reported genes of unknown function.	0.877
PP_0103	ccoP-I	PP_0103	PP_4253	Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Cytochrome c oxidase subunit, cbb3-type; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.894
PP_0103	ccoP-II	PP_0103	PP_4258	Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Cytochrome c oxidase subunit, cbb3-type; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.894
PP_0103	cyoA	PP_0103	PP_0812	Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Cytochrome bo terminal oxidase subunit II; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Aerobic.	0.512
PP_0103	petA	PP_0103	PP_1317	Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.994
PP_0103	petB	PP_0103	PP_1318	Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.998
PP_0111	PP_0103	PP_0111	PP_0103	Electron transport protein SCO1/SenC.	Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.765
PP_0111	PP_2380	PP_0111	PP_2380	Electron transport protein SCO1/SenC.	Homologs of previously reported genes of unknown function.	0.628
PP_0111	cyoA	PP_0111	PP_0812	Electron transport protein SCO1/SenC.	Cytochrome bo terminal oxidase subunit II; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Aerobic.	0.597
PP_0111	petA	PP_0111	PP_1317	Electron transport protein SCO1/SenC.	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.539
PP_0111	petB	PP_0111	PP_1318	Electron transport protein SCO1/SenC.	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.459
PP_2379	PP_0103	PP_2379	PP_0103	Putative cytochrome oxidase biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Energymetabolism : Electron transport.	Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.758
PP_2379	PP_2380	PP_2379	PP_2380	Putative cytochrome oxidase biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Energymetabolism : Electron transport.	Homologs of previously reported genes of unknown function.	0.936
PP_2379	cyoA	PP_2379	PP_0812	Putative cytochrome oxidase biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Energymetabolism : Electron transport.	Cytochrome bo terminal oxidase subunit II; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Aerobic.	0.597
PP_2379	petA	PP_2379	PP_1317	Putative cytochrome oxidase biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Energymetabolism : Electron transport.	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.533
PP_2379	petB	PP_2379	PP_1318	Putative cytochrome oxidase biogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Energymetabolism : Electron transport.	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.417
PP_2380	PP_0103	PP_2380	PP_0103	Homologs of previously reported genes of unknown function.	Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.877
PP_2380	PP_0111	PP_2380	PP_0111	Homologs of previously reported genes of unknown function.	Electron transport protein SCO1/SenC.	0.628