STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2387Homologs of previously reported genes of unknown function. (360 aa)    
Predicted Functional Partners:
PP_2386
Homologs of previously reported genes of unknown function.
  
    0.775
PP_2389
Homologs of previously reported genes of unknown function.
  
    0.677
PP_2388
Transporter, LysE family.
  
    0.665
PP_2383
Transcriptional regulator, AraC family.
       0.479
PP_2384
Homologs of previously reported genes of unknown function.
       0.479
azlC
Branched-chain amino acid transport protein AzlC.
       0.479
PP_2390
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.443
PP_1569
Homologs of previously reported genes of unknown function.
  
 
 0.427
PP_4858
Homologs of previously reported genes of unknown function.
   
 
 0.414
birA
Bifunctional biotin-[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
     
 0.413
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.