Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_2390Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (306 aa)    
Predicted Functional Partners:
PP_3934
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.702
PP_3493
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.688
PP_2961
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.676
PP_1861
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.659
PP_3567
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.656
PP_4525
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.653
PP_4579
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.650
PP_2041
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.647
PP_2701
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.637
PP_4460
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.635
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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