Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PP_2397EF hand domain protein. (218 aa)    
Predicted Functional Partners:
PP_2400
Homologs of previously reported genes of unknown function.
 
  
 0.987
PP_2401
Homologs of previously reported genes of unknown function.
  
  
 0.972
PP_2399
Homologs of previously reported genes of unknown function.
 
  
 0.961
PP_2758
Putative Ribose ABC transporter, periplasmic ribose-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.938
PP_2398
Conserved protein of unknown function, UPF0276 family; Homologs of previously reported genes of unknown function; Unknown function; Belongs to the UPF0276 family.
 
  
 0.892
PP_5322
Putative metal ion transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
      
 0.866
PP_2402
Putative Sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  
 0.821
tauB-II
ATP-binding taurine transporter subunit; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
      
 0.812
envZ
Osmolarity sensor protein EnvZ.
   
  
 0.768
thiL
Thiamin monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
      
 0.768
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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