STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2398Conserved protein of unknown function, UPF0276 family; Homologs of previously reported genes of unknown function; Unknown function; Belongs to the UPF0276 family. (277 aa)    
Predicted Functional Partners:
PP_2399
Homologs of previously reported genes of unknown function.
 
  
 0.981
PP_0993
Homologs of previously reported genes of unknown function.
 
  
 0.933
PP_0991
Homologs of previously reported genes of unknown function.
  
 0.932
PP_2397
EF hand domain protein.
 
  
 0.867
PP_0990
DoxX family protein.
  
 0.810
PP_3335
Homologs of previously reported genes of unknown function.
   
 
 0.722
PP_2400
Homologs of previously reported genes of unknown function.
 
  
 0.600
PP_4924
Serine protease, subtilase family.
   
    0.570
PP_2396
Homologs of previously reported genes of unknown function.
       0.555
mgtA
Magnesium transporter, ATP-dependent; Function of homologous gene experimentally demonstrated in an other organism; transporter; Energymetabolism : ATP-proton motive force interconversion.
   
    0.525
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.