PP_2413 protein (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PP_2413

GGDEF family protein. (544 aa)

Predicted Functional Partners:

pilH

0.900

PP_3435

0.820

PP_3672

0.819

PP_1718

0.807

PP_2414

0.773

PP_0131

0.766

PP_4959

0.591

PP_3413

0.581

PP_2415

0.572

PP_1154

0.556

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_0131	PP_1154	PP_0131	PP_1154	Putative membrane-anchored phosphodiesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Sensory box protein.	0.488
PP_0131	PP_2413	PP_0131	PP_2413	Putative membrane-anchored phosphodiesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	GGDEF family protein.	0.766
PP_1154	PP_0131	PP_1154	PP_0131	Sensory box protein.	Putative membrane-anchored phosphodiesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.488
PP_1154	PP_1718	PP_1154	PP_1718	Sensory box protein.	Putative diguanylate phosphodiesterase containing EAL domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.	0.591
PP_1154	PP_2413	PP_1154	PP_2413	Sensory box protein.	GGDEF family protein.	0.556
PP_1154	PP_3413	PP_1154	PP_3413	Sensory box protein.	Sensor histidine kinase/response regulator.	0.950
PP_1154	PP_3435	PP_1154	PP_3435	Sensory box protein.	Homologs of previously reported genes of unknown function.	0.588
PP_1154	PP_3672	PP_1154	PP_3672	Sensory box protein.	Homologs of previously reported genes of unknown function.	0.423
PP_1154	PP_4959	PP_1154	PP_4959	Sensory box protein.	Diguanylate cyclase; Function of strongly homologous gene; enzyme.	0.934
PP_1718	PP_1154	PP_1718	PP_1154	Putative diguanylate phosphodiesterase containing EAL domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.	Sensory box protein.	0.591
PP_1718	PP_2413	PP_1718	PP_2413	Putative diguanylate phosphodiesterase containing EAL domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.	GGDEF family protein.	0.807
PP_1718	PP_3413	PP_1718	PP_3413	Putative diguanylate phosphodiesterase containing EAL domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.	Sensor histidine kinase/response regulator.	0.527
PP_1718	PP_4959	PP_1718	PP_4959	Putative diguanylate phosphodiesterase containing EAL domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.	Diguanylate cyclase; Function of strongly homologous gene; enzyme.	0.583
PP_2413	PP_0131	PP_2413	PP_0131	GGDEF family protein.	Putative membrane-anchored phosphodiesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.766
PP_2413	PP_1154	PP_2413	PP_1154	GGDEF family protein.	Sensory box protein.	0.556
PP_2413	PP_1718	PP_2413	PP_1718	GGDEF family protein.	Putative diguanylate phosphodiesterase containing EAL domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.	0.807
PP_2413	PP_2414	PP_2413	PP_2414	GGDEF family protein.	Homologs of previously reported genes of unknown function.	0.773
PP_2413	PP_2415	PP_2413	PP_2415	GGDEF family protein.	Putative acetyltransferase, GNAT family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.	0.572
PP_2413	PP_3413	PP_2413	PP_3413	GGDEF family protein.	Sensor histidine kinase/response regulator.	0.581
PP_2413	PP_3435	PP_2413	PP_3435	GGDEF family protein.	Homologs of previously reported genes of unknown function.	0.820