STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2418Putative cobalamin ABC transporter, periplasmic; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (364 aa)    
Predicted Functional Partners:
PP_2416
Putative Iron ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.994
PP_2417
Putative Iron ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.990
PP_4688
Heme/hemin ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.883
PP_1418
Putative Tricarboxylate transport protein TctC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.855
gabP-II
Gamma-aminobutyrate permease; Function of homologous gene experimentally demonstrated in an other organism; transporter.
   
  
 0.788
PP_1358
Putative heme iron utilization protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
 
    0.619
PP_0180
Putative cytochrome c family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
   
  
 0.593
fepA
Ferric enterobactin transport system outer membrane subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Cations and iron carrying compounds.
 
  
 0.535
pvdT
Pyoverdine efflux carrier and ATP binding protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.525
cobJ
Precorrin-3B C17-methyltransferase.
  
  
 0.522
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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