STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
PP_2425Putative transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (301 aa)    
Predicted Functional Partners:
PP_1415
Putative membrane associated enzyme subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
      
 0.970
PP_5244
Transcriptional regulator, AraC family.
  
     0.723
PP_2430
Transcriptional regulator, AraC family.
  
    0.720
PP_3022
Transcriptional regulator, AraC family.
  
     0.710
PP_2960
Transcriptional regulator, AraC family; Function of strongly homologous gene; regulator; Regulatory functions.
  
     0.693
PP_3640
Transcriptional regulator, AraC family.
  
    0.684
PP_3526
Transcriptional regulator, AraC family.
  
   0.636
calA
Coniferyl alcohol dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
  
    0.625
PP_4605
Transcriptional regulator, AraC family.
  
     0.621
PP_2234
Transcriptional regulator, AraC family.
  
   0.597
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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