STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2431Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (307 aa)    
Predicted Functional Partners:
PP_3698
Homologs of previously reported genes of unknown function.
   
  
 0.866
PP_5395
Homologs of previously reported genes of unknown function.
      
 0.865
PP_3689
Putative Serine/threonine protein phosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  
 0.819
dppA-III
Dipeptide ABC transporter - periplasmic binding protein; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines.
      
 0.763
PP_5300
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.733
PP_0055
Transcriptional regulator; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.715
PP_5126
Conserved protein of unknown function containing an HDOD domain; Homologs of previously reported genes of unknown function; Unknown function.
      
 0.655
nfnB
6,7-dihydropteridine reductase; Function of strongly homologous gene; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
     0.652
asd-2
Aspartate-semialdehyde dehydrogenase; Function of strongly homologous gene; enzyme; Aminoacidbiosynthesis : Aspartate family; Belongs to the aspartate-semialdehyde dehydrogenase family.
      
 0.651
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
   
  
 0.634
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.