STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2505GAF domain/GGDEF domain protein. (345 aa)    
Predicted Functional Partners:
PP_0914
GGDEF domain protein.
 
 0.983
PP_3672
Homologs of previously reported genes of unknown function.
  
 0.981
PP_3728
Sensor histidine kinase/response regulator.
  
 0.973
gacS
Sensor protein GacS.
  
 0.971
PP_2557
Sensory box protein.
 
 
0.951
PP_3758
Response regulator/sensor histidine kinase.
 
  
 0.951
PP_4173
Sensor histidine kinase/response regulator.
  
 0.949
PP_1875
Sensor histidine kinase/response regulator.
  
 0.947
PP_0131
Putative membrane-anchored phosphodiesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.944
PP_2683
Putative sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.941
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.