Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| benK | benR | PP_3165 | PP_3159 | Benzoate MFS transporter; Function of strongly homologous gene; transporter; Energy metabolism. | BenABC operon transcriptional activator; Function experimentally demonstrated in the studied species; regulator; Energy metabolism. | 0.855 |
| benK | gllP | PP_3165 | PP_2517 | Benzoate MFS transporter; Function of strongly homologous gene; transporter; Energy metabolism. | Porin-like protein; Probable transporter, possibly involved in the gallate degradation pathway. May play a role in the uptake of low gallate concentrations that may exist in the natural habitats of P.putida (Probable). | 0.646 |
| benR | benK | PP_3159 | PP_3165 | BenABC operon transcriptional activator; Function experimentally demonstrated in the studied species; regulator; Energy metabolism. | Benzoate MFS transporter; Function of strongly homologous gene; transporter; Energy metabolism. | 0.855 |
| benR | gllP | PP_3159 | PP_2517 | BenABC operon transcriptional activator; Function experimentally demonstrated in the studied species; regulator; Energy metabolism. | Porin-like protein; Probable transporter, possibly involved in the gallate degradation pathway. May play a role in the uptake of low gallate concentrations that may exist in the natural habitats of P.putida (Probable). | 0.645 |
| gllP | benK | PP_2517 | PP_3165 | Porin-like protein; Probable transporter, possibly involved in the gallate degradation pathway. May play a role in the uptake of low gallate concentrations that may exist in the natural habitats of P.putida (Probable). | Benzoate MFS transporter; Function of strongly homologous gene; transporter; Energy metabolism. | 0.646 |
| gllP | benR | PP_2517 | PP_3159 | Porin-like protein; Probable transporter, possibly involved in the gallate degradation pathway. May play a role in the uptake of low gallate concentrations that may exist in the natural habitats of P.putida (Probable). | BenABC operon transcriptional activator; Function experimentally demonstrated in the studied species; regulator; Energy metabolism. | 0.645 |
| gllP | glllA | PP_2517 | PP_2518 | Porin-like protein; Probable transporter, possibly involved in the gallate degradation pathway. May play a role in the uptake of low gallate concentrations that may exist in the natural habitats of P.putida (Probable). | Gallate dioxygenase; Ring-cleavage dioxygenase that acts specifically on gallate to produce the keto-tautomer of 4-oxalomesaconate. Mediates the first step of gallate degradation pathway. | 0.502 |
| gllP | gtsC | PP_2517 | PP_1017 | Porin-like protein; Probable transporter, possibly involved in the gallate degradation pathway. May play a role in the uptake of low gallate concentrations that may exist in the natural habitats of P.putida (Probable). | Mannose/glucose ABC transporter, permease protein; Function experimentally demonstrated in the studied strain; transporter; Transport and binding proteins. | 0.400 |
| glllA | gllP | PP_2518 | PP_2517 | Gallate dioxygenase; Ring-cleavage dioxygenase that acts specifically on gallate to produce the keto-tautomer of 4-oxalomesaconate. Mediates the first step of gallate degradation pathway. | Porin-like protein; Probable transporter, possibly involved in the gallate degradation pathway. May play a role in the uptake of low gallate concentrations that may exist in the natural habitats of P.putida (Probable). | 0.502 |
| gtsC | gllP | PP_1017 | PP_2517 | Mannose/glucose ABC transporter, permease protein; Function experimentally demonstrated in the studied strain; transporter; Transport and binding proteins. | Porin-like protein; Probable transporter, possibly involved in the gallate degradation pathway. May play a role in the uptake of low gallate concentrations that may exist in the natural habitats of P.putida (Probable). | 0.400 |