Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_2578Homologs of previously reported genes of unknown function. (176 aa)    
Predicted Functional Partners:
PP_2577
Putative paraquat-inducible protein B (pqiB like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process; Cellularprocesses : Detoxification.
 
  
 0.954
PP_5745
Paraquat-inducible protein A; Function of strongly homologous gene; cell process.
 
  
 0.885
PP_0598
Paraquat-inducible protein A; Function of strongly homologous gene; cell process.
 
  
 0.872
PP_3153
Homologs of previously reported genes of unknown function.
  
     0.681
PP_0599
Paraquat-inducible protein B; Function of strongly homologous gene; phenotype; Unknown function.
 
   
 0.680
PP_2104
Homologs of previously reported genes of unknown function.
  
     0.623
PP_4911
Homologs of previously reported genes of unknown function.
  
     0.540
yhhS
Carbohydrate efflux transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
  
     0.511
PP_0054
Homologs of previously reported genes of unknown function.
  
     0.480
oprC
Outer membrane copper receptor OprC.
  
     0.468
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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