STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2590Outer membrane ferric siderophore receptor. (771 aa)    
Predicted Functional Partners:
PP_4611
RNA polymerase sigma-70 factor, ECF subfamily.
  
  
 0.930
fatB
Ferric anguibactin-binding protein.
 
  
 0.783
PP_2593
Ferric siderophore ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.773
fatD
Ferric anguibactin transport system permease protein FatD; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.756
PP_0349
Putative Membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.751
PP_2592
Ferric siderophore ABC transporter, ATP-binding protein.
 
    0.733
tonB
Protein TonB.
 
 
 0.705
PP_2595
Putative ABC transporter, permease/ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
 
  
 0.702
PP_2596
Putative ABC transporter, permease/ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.694
pvdL
Non-ribosomal peptide synthase (subunit of ferribactin synthase); Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis.
  
  
 0.675
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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