STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2604Major facilitator family transporter; Function of strongly homologous gene; transporter; Transport and binding proteins. (441 aa)    
Predicted Functional Partners:
PP_2241
Putative major facilitator family transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
      
 0.882
PP_4441
Transposase.
      
 0.750
PP_5398
Transposase.
      
 0.750
cheY
Response regulator for chemotactic signal transduction; Function of homologous gene experimentally demonstrated in an other organism; regulator; Proteinfate : Protein modification and repair.
      
 0.746
PP_4888
Putative methyl-accepting chemotaxis transducer; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component; Signal transduction.
   
  
 0.739
PP_3391
Putative Tartrate MFS transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.683
PP_0256
Putative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Central intermediary metabolism; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
  
 0.658
PP_4540
Hydrolase, alpha/beta fold family.
   
  
 0.652
PP_4551
Hydrolase, alpha/beta fold family.
      
 0.650
PP_4690
Rieske 2Fe-2S family protein.
      
 0.650
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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