Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_2606Homologs of previously reported genes of unknown function. (106 aa)    
Predicted Functional Partners:
PP_2607
Homologs of previously reported genes of unknown function.
    0.889
PP_2605
Homologs of previously reported genes of unknown function.
     0.793
PP_2608
Shikimate dehydrogenase family protein.
  
    0.776
PP_2609
Transcriptional regulator, IclR family.
  
    0.528
PP_2654
Putative Glutathione S-transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.511
PP_2600
Homologs of previously reported genes of unknown function.
     0.448
PP_3224
Class II aldolase/adducin domain protein.
  
    0.420
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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