STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcp-1Hemolysin-coregulated protein; Similar to GP:2920641; identified by sequence similarity; putative (171 aa)    
Predicted Functional Partners:
vgrG-1
Type 6 secretion system protein; Similar to GP:2920640; identified by sequence similarity; putative
 
   
 0.961
PP_2623
Identified by match to PFAM protein family HMM PF00595
 
 
 0.946
PP_2624
Uncharacterized protein; Similar to GP:2920642, and GP:2920642; identified by sequence similarity; putative
 
 
 0.929
vgrG-3
Type 6 secretion system protein; Similar to GP:2920640; identified by sequence similarity; putative
 
   
 0.906
vgrG-2
Type 6 secretion system protein; Similar to GP:2920640; identified by sequence similarity; putative
 
   
 0.899
PP_2622
Uncharacterized protein; Identified by Glimmer2; putative
 
  
 0.894
PP_2616
Uncharacterized protein; Identified by Glimmer2; putative
 
  
 0.892
PP_2617
Uncharacterized protein; Identified by Glimmer2; putative
 
   
 0.890
PP_4074
Uncharacterized protein; Identified by Glimmer2; putative
 
 
 0.883
PP_2621
Uncharacterized protein; Identified by Glimmer2; putative
 
  
 0.878
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida KT2440, Pseudomonas putida str. KT2440
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