Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hcpC-IHemolysin-coregulated protein; Function of strongly homologous gene; factor. (171 aa)    
Predicted Functional Partners:
vgrG-I
Type 6 secretion system protein; Function of strongly homologous gene; regulator.
 
  
 0.980
vgrG-III
Type 6 secretion system protein; Function of strongly homologous gene; regulator.
 
  
 0.962
vgrG-II
Type 6 secretion system protein; Function of strongly homologous gene; regulator.
 
  
 0.956
PP_2623
Homologs of previously reported genes of unknown function.
 
 
 0.937
PP_2624
Homologs of previously reported genes of unknown function.
 
 
 0.918
PP_3089
Homologs of previously reported genes of unknown function.
     
 0.904
PP_4886
Homologs of previously reported genes of unknown function.
     
 0.904
PP_5238
Homologs of previously reported genes of unknown function.
     
 0.904
hcpC-II
Hemolysin-coregulated protein; Function of strongly homologous gene; factor.
  
  
0.900
PP_2620
Homologs of previously reported genes of unknown function.
 
  
 0.878
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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