Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_2648Universal stress protein family. (309 aa)    
Predicted Functional Partners:
PP_2647
Major facilitator family transporter.
     
 0.841
yciH
Translation-related factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Unknown function.
  
   
 0.745
PP_2695
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
      
 0.741
PP_3658
Putative Aromatic compound MFS transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.741
yigI
Homologs of previously reported genes of unknown function.
      
 0.740
PP_3425
Efflux transporter RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
      
 0.650
arcB
Ornithine carbamoyltransferase, catabolic; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
   
  
 0.564
frmC
S-formylglutathione hydrolase / S-lactoylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
      
 0.549
calA
Coniferyl alcohol dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
   
  
 0.500
vanA
Vanillate O-demethylase oxygenase subunit; Function experimentally demonstrated in the studied species; enzyme; Biologicalprocesses : Scavenge (Catabolism).
  
   
 0.493
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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