STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2662Homologs of previously reported genes of unknown function. (395 aa)    
Predicted Functional Partners:
PP_4283
Transcriptional regulator, GntR family.
  
   
 0.942
PP_2046
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
      
 0.930
gcl
Glyoxylate carboligase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energy metabolism; Belongs to the TPP enzyme family.
   
  
 0.836
PP_2663
Homologs of previously reported genes of unknown function.
 
    0.835
PP_2664
Putative hybrid sensor and regulator, histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Regulatory functions.
 
 
 0.810
PP_2675
Cytochrome c-type protein.
 
    0.769
qedH-I
Quinoprotein ethanol dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism.
 
    0.691
oprP
Porin P; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
 
    0.678
PP_3464
Homologs of previously reported genes of unknown function.
  
   
 0.674
PP_2673
Pentapeptide repeat family protein.
  
  
 0.668
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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