Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_2662Homologs of previously reported genes of unknown function. (395 aa)    
Predicted Functional Partners:
PP_2676
Putative Periplasmic binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.940
PP_2663
Homologs of previously reported genes of unknown function.
 
    0.907
PP_2675
Cytochrome c-type protein.
 
  
 0.895
PP_1446
TonB-dependent receptor.
     
 0.862
PP_2046
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
      
 0.855
PP_2664
Putative hybrid sensor and regulator, histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Regulatory functions.
 
   0.834
PP_2678
Putative Hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.822
PP_0375
Prolyl oligopeptidase family protein.
  
  
 0.815
PP_4283
Transcriptional regulator, GntR family.
  
   
 0.807
qedH-II
Quinoprotein ethanol dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism.
 
  
 0.763
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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