STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exaETranscriptional activator protein ExaE. (212 aa)    
Predicted Functional Partners:
PP_2671
Sensor histidine kinase.
 
 0.998
PP_2664
Putative hybrid sensor and regulator, histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Regulatory functions.
 
 
 0.939
PP_0409
Sensory box histidine kinase.
 
 
 0.896
PP_2675
Cytochrome c-type protein.
   
  
 0.877
PP_2127
Sensor histidine kinase.
 
 0.865
PP_3413
Sensor histidine kinase/response regulator.
 
 
 0.802
PP_2065
Multidrug efflux RND transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
  
 0.750
ccmD
Heme exporter protein D; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
      
 0.739
gacS
Sensor protein GacS.
 
 
 0.689
PP_3728
Sensor histidine kinase/response regulator.
 
 
 0.684
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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