Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_2686Transglutaminase-like superfamily domain protein. (259 aa)    
Predicted Functional Partners:
PP_2687
Homologs of previously reported genes of unknown function.
  
 0.999
PP_2688
Homologs of previously reported genes of unknown function.
 
    0.981
PP_2685
Homologs of previously reported genes of unknown function.
 
    0.952
PP_3007
Homologs of previously reported genes of unknown function.
      
 0.761
PP_2259
Putative sigma-54 dependent transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
      
 0.747
PP_2261
Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
      
 0.747
PP_2262
Sugar ABC transporter, permease protein; Function of strongly homologous gene; transporter; Transport and binding proteins.
      
 0.747
PP_4331
Homologs of previously reported genes of unknown function.
      
 0.745
PP_2263
Sugar ABC transporter, permease protein.
      
 0.741
PP_0779
Methyl-accepting chemotaxis transducer/sensory box protein.
   
  
 0.710
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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