STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_2691Homologs of previously reported genes of unknown function. (572 aa)    
Predicted Functional Partners:
PP_2693
Putative Dipeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.915
PP_2692
Putative Transporter, BCCT family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the BCCT transporter (TC 2.A.15) family.
 
    0.848
PP_2694
Aldehyde dehydrogenase family protein.
 
     0.848
PP_2690
Homologs of previously reported genes of unknown function.
 
    0.838
PP_2695
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
    0.795
PP_0308
Putative dipeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.732
PP_2689
Putative Endoribonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.728
PP_5373
Rieske 2Fe-2S family protein.
  
     0.696
PP_5609
Homologs of previously reported genes of unknown function.
  
     0.497
creA
Creatinase; Function experimentally demonstrated in the studied species; enzyme; Proteinfate : Degradation of proteins, peptides, and glycopeptides.
  
    0.459
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.